BMB615. RNA Structure: Some Example PDB files

Note: List of pdb files shown in class; this is NOT a exhaustive list of all the structures we discussed.

  • RNA Duplex (A form) - 1RNA.pdb
  • DNA Duplex (B form) - 2D25.pdb
  • E. coli 23S rRNA Sarcin/Ricin domain 483D.pdb
  • GUAA tetraloop - Sarcin/Ricin domain - 1MSY.pdb
  • RNA Hairpin with AGAA tetraloop (NMR) - 1ATV.pdb
  • U1A Spliceosomal protein with RNA (NMR) - 1URN.pdb
  • RNA Hammerhead - 1HMN.pdb
  • Hairpin ribozyme - catalytic conformation with vanadate bound - 1M5O.pdb
  • Diels-Alder ribozyme-product complex 1YLS.pdb
  • L1 ribozyme ligase circular adduct 2OIU.pdb